Package | Description |
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jebl.evolution.align.scores | |
jebl.evolution.substmodel |
Constructor and Description |
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SubstScoreMatrix(RateMatrix rateMatrix) |
Modifier and Type | Class and Description |
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class |
AbstractRateMatrix
abstract base class for all rate matrices
|
class |
AminoAcidModel
base class of rate matrices for amino acids
|
class |
WAG
WAG model of amino acid evolution (S.
|
Modifier and Type | Method and Description |
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void |
MatrixExponential.setMatrix(RateMatrix r)
update rate matrix used in present module
|
Constructor and Description |
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MatrixExponential(RateMatrix r)
create module
|
http://code.google.com/p/jebl2/