public class TamuraNeiDistanceMatrix extends BasicDistanceMatrix
Constructor and Description |
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TamuraNeiDistanceMatrix(Alignment alignment,
ProgressListener progress) |
TamuraNeiDistanceMatrix(Alignment alignment,
ProgressListener progress,
boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) |
getDistance, getDistance, getDistances, getSize, getSubmatrix, getTaxa
public TamuraNeiDistanceMatrix(Alignment alignment, ProgressListener progress, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable) throws CannotBuildDistanceMatrixException
CannotBuildDistanceMatrixException
- only if useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable is falsepublic TamuraNeiDistanceMatrix(Alignment alignment, ProgressListener progress) throws CannotBuildDistanceMatrixException
http://code.google.com/p/jebl2/